You don't need to worry for either park at all. Obviously get to Fahrenheit first and then, probably Great Bear and then Comet. (In order of likeliness to develop long lines.) After that, do pretty much whatever you want. It won't matter much after that point. My experiences with Storm Runner is that it never got more than 25 minutes, so IMO it doesn't matter too much with that. Fahrenheit can get to about an hour and a half, Great Bear can get to about an hour and a half, and Comet can get to about 45 minutes. Everything else in the park almost always gets less than 30 minutes.
The water park is almost invariably PACKED when I go, so that saps a HUGE amount of guests from the dry part of the park.
I don't think you should bother with Roller Soaker at all. I've been there three times since the park opened that ride, and I never rode it because the lines often get over 2 hours. If those lines were on Storm Runner, yeah I'd wait for it, but not a ride like Roller Soaker. When choosing between one ride on Roller Soaker and 4 rides on Storm Runner, it's a no-brainer
Other tips:
1: The "wheelchair entrance" next to the real entrance for Fahrenheit is actually a single ride entrance. I recommend getting in this line because it decreases the wait time by about a factor of three, and since the trains are so small, the chances of getting the front or back are very high at 1/3. (4 out of the 12 seats are front or back.)
2: On Storm Runner, MAKE SURE TO RIDE IN THE BACK. And MAKE SURE TO LEAN FORWARD AND LOOK DOWN DURING THE LAUNCH. I have no idea why, but for some reason, this body position makes the launch MUCH more intense. I've tried it on multiple roller coasters and even several drop towers; every time it works. Also, it would be a good idea to do the same on hyper coasters when you come across them as it makes the drop feel about 20 degrees steeper. (Actually, that would likely work on all coasters, but I only remember to do it on hyper coasters.) Again, I have tried that multiple times and it makes a huge difference. I don't understand how, but it works.
For Knoebels, you have nothing to worry about. The lines can get to about 20 minutes for Phoenix, and the car ride seems to have a good line. But other than that, the lines are minimal. Make sure you eat at Cesari's Pizza.